[This is a crosspost of my reply elsewhere - not sure which you check so I'm posting it here too!]
Hey there mate,
It seems you're in a difficult but good position. It's a natural trade-off you're facing. Big name but a potential limitation on impact versus a smaller company where you can wear more hats and do more things.
But to get to the right answer, you need to ask the right question. And that question isn't, "will this hurt my chances at an MBA.". The question you should be asking is, "what's right for ME? Where will I develop?" Because if you can answer that question, then the story you tell an adcom will not only be logical, but stronger too.
And keep in mind what you want personally too. If one of your goals has been to get out of the Bay Area then go ahead and do that. You appear to have a strong opportunity lined up so it's not as if you're moving just for the sake of it.
As for applying this fall, you're a little on the low side in terms of years of experience. You have a great GMAT and a strong GPA but if your position is as junior as you're saying, then you could probably use a little more time to build up that profile. If you get the rest of your profile built up (and marketing agencies can be a great way to do that), then you should be in contention for the tier of schools you're interested in.
Let me know if you have any questions or want to talk this through!
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