We don't want to knock out a choice for using the passive voice unless there is something that makes passive voice wrong/inappropriate. Answer choice A has plenty of problems, and while passive voice is not inherently wrong, it does play a role in the trouble here.
Let's look at the modifier beginning with "that a fragment . . ." What is it supposed to modify? Presumably "discovery." So what if we strip out some other modifiers to see how that looks? "A discovery has been made that a fragment seems like it came from a depth." This doesn't work. First, we can "discover that X happened" or we can "make the discovery that X happened." But we don't want to say "A discovery has been made that X happened." The structure running up to "that" sets us up to expect the modifier to talk about the effect of the discovery itself, as in "A discovery has been made that changes our view of the early Solar System." Do you see the difference? We just want to describe what was discovered, not add detail about the effect or nature of the discovery, so this structure is confusing. That's why passive voice doesn't work well here. Given all that we want to add in the modifiers, it really helps to use the simple structure "discovered that." Strangely, though, none of the answers give us that. This leads us to another problem.
What is it that has really been discovered? According to A, the team has discovered that this fragment seems to have come from great depths. But it's odd that they
discovered what it
seems to do. If it really comes from the depths, then we don't need to emphasize the
seeming, but if it doesn't, then we don't have much of a discovery. It's more sensible to say that the team discovered a fragment, and this fragment seems to come from the depths. That's more or less what every choice but A goes with.
Another problem? "Seems like." This is a common expression in speech, but it's not good for formal written English, especially when no comparison is being made. (If the fragment is "like" something, what is it?) In fact, we can get to D on the merits of "seems to have" alone.
Finally, "a depth as far down" is redundant!
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